BtaEX6013740 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013801 | PBX1
Description
pre-B-cell leukemia homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8632]
Coordinates
chr3:4285860-4523833:-
Coord C1 exon
chr3:4523760-4523833
Coord A exon
chr3:4292399-4292643
Coord C2 exon
chr3:4285860-4286050
Length
245 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTATCTCCCTGCAGTTT
3' ss Score
11.86
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
AAAACATGCTTTAAACTGCCACAGAATGAAGCCTGCCTTGTTTAATGTCTTGTGTGAAATCAAAGAGAAAACAG
Seq A exon
TTTTGAGTATCCGGGGAGCCCAGGAAGAGGAGCCAACAGACCCGCAGCTGATGCGACTGGACAACATGCTGCTGGCCGAGGGGGTGGCGGGGCCCGAGAAGGGCGGGGGCTCAGCGGCGGCGGCGGCCGCGGCTGCTGCTTCTGGAGGCGCCGGTTCCGACAACTCAGTGGAGCATTCCGATTACAGAGCCAAACTCTCACAGATCAGACAAATCTACCACACGGAGCTGGAGAAATACGAGCAG
Seq C2 exon
GCATGTAACGAGTTCACCACCCATGTGATGAACCTCCTGCGAGAACAAAGCCGGACCAGGCCTATTTCCCCAAAGGAGATCGAGCGGATGGTCAGTATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACGTGTGAGGCCGTCATGATCCTGCGTTCCCGGTTCCTGGATGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013801-'1-8,'1-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.659 C2=0.219
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.6=100)
A:
PF037928=PBC=FE(40.9=100),PF070286=DUF1319=PU(41.9=47.6),PF040917=Sec15=PU(33.8=32.9)
C2:
PF037928=PBC=PD(30.8=95.3),PF070286=DUF1319=PD(55.9=81.2),PF040917=Sec15=PD(63.8=79.7),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGCTTTAAACTGCCACAGA
R:
GCATCCAGGAACCGGGAAC
Band lengths:
260-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]