MmuEX6029025 @ mm10
Exon Skipping
Gene
ENSMUSG00000052534 | Pbx1
Description
pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
Coordinates
chr1:168203347-168427942:-
Coord C1 exon
chr1:168427869-168427942
Coord A exon
chr1:168209351-168209595
Coord C2 exon
chr1:168203347-168203537
Length
245 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGTCTTTCTCTGTAGTTT
3' ss Score
10.99
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AAAACATGCTTTAAACTGCCACAGAATGAAGCCTGCCTTGTTTAATGTGTTGTGTGAAATCAAAGAAAAAACAG
Seq A exon
TTTTGAGTATTCGGGGAGCCCAAGAAGAGGAGCCCACAGACCCCCAGCTCATGCGACTGGACAACATGCTGCTAGCAGAAGGGGTGGCGGGGCCTGAGAAGGGCGGAGGCTCGGCAGCGGCGGCGGCGGCAGCGGCAGCTTCTGGGGGTGCAGGTTCAGACAACTCAGTGGAGCATTCCGACTACAGAGCCAAACTCTCACAGATCAGACAAATCTACCACACAGAGCTGGAGAAGTATGAGCAG
Seq C2 exon
GCATGCAATGAATTCACCACCCACGTGATGAACCTCCTTCGAGAGCAAAGCCGGACCAGGCCCATCTCTCCGAAGGAGATCGAGCGGATGGTGAGCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTGAAACAGAGCACGTGCGAGGCCGTCATGATCCTGCGCTCCCGGTTCCTGGATGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052534-'2-8,'2-7,28-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.657 C2=0.225
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.6=100)
A:
PF037928=PBC=FE(40.9=100),PF070286=DUF1319=PU(43.8=51.2),PF040917=Sec15=PU(32.9=32.9)
C2:
PF037928=PBC=PD(30.8=95.3),PF070286=DUF1319=PD(54.2=81.2),PF040917=Sec15=PD(64.6=82.8),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTTTAAACTGCCACAGA
R:
CGCATCCAGGAACCGGGAG
Band lengths:
260-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types