DreEX6026378 @ danRer10
Exon Skipping
Gene
ENSDARG00000100494 | pbx1a
Description
pre-B-cell leukemia homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000405-1]
Coordinates
chr2:19078650-19179249:-
Coord C1 exon
chr2:19179176-19179249
Coord A exon
chr2:19085608-19085852
Coord C2 exon
chr2:19078650-19078840
Length
245 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTCTCTTAACAGTAC
3' ss Score
11.1
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAAGCATGCGCTGAATTGTCACAGAATGAAGCCGGCTCTGTTCAACGTCCTGTGTGAAATAAAAGAAAAAACAG
Seq A exon
TACTCAGTATCCGTGGAGCTCAGGAGGAGGAGCCACCAGATGCACAGCTCATGCGACTGGATAACATGCTGCTGGCTGAGGGTGTGTCTGGTCCTGAGAAAGGGGGCGGGTCTGCTGCTGCTGCAGCTGCTGCTGCTGCGGCAGGCGGCGTCGGCTCCGATAACTCCGCCGAACACTCAGACTACAGGGCCAAGCTGTCCCAGATCCGTCAGATCTACCACACAGAACTAGAGAAGTATGAGCAG
Seq C2 exon
GCGTGTAATGAGTTCACCACCCATGTGATGAACCTGCTGAGGGAGCAGTCTCGCACCCGGCCCATCTCCCCCAAAGAGATAGAGCGCATGGTGAGCATCATCCACCGCAAGTTCAGCTCCATCCAAATGCAGCTCAAACAGAGCACCTGCGAGGCGGTCATGATCCTGCGCTCCCGCTTCCTCGACGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100494-'1-8,'1-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.537 C2=0.219
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.6=100)
A:
PF037928=PBC=FE(40.9=100),PF070286=DUF1319=PU(54.6=79.3),PF040917=Sec15=PU(30.4=29.3)
C2:
PF037928=PBC=PD(30.8=95.3),PF070286=DUF1319=PD(43.7=81.2),PF040917=Sec15=PD(67.1=82.8),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCGCTGAATTGTCACAG
R:
CTTGCGTCGAGGAAGCGG
Band lengths:
262-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]