RnoEX6061552 @ rn6
Exon Skipping
Gene
ENSRNOG00000000440 | Pbx2
Description
PBX homeobox 2 [Source:RGD Symbol;Acc:1303084]
Coordinates
chr20:4358883-4359732:+
Coord C1 exon
chr20:4358883-4358956
Coord A exon
chr20:4359159-4359406
Coord C2 exon
chr20:4359542-4359732
Length
248 bp
Sequences
Splice sites
3' ss Seq
TCCACTTGCCTGCCTGCTAGGCC
3' ss Score
7.75
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAAACACGCCCTAAACTGTCACCGAATGAAGCCTGCCCTGTTTAGTGTCCTGTGTGAAATCAAGGAGAAAACTG
Seq A exon
GCCTTAGCATTCGCAGCTCCCAAGAGGAGGAGCCAGTGGACCCACAGCTGATGCGCCTGGACAACATGCTTCTGGCAGAAGGTGTGGCTGGACCCGAGAAGGGGGGCGGCTCTGCAGCGGCAGCTGCAGCCGCGGCAGCCTCCGGAGGTGGCGTGTCCCCGGATAACTCCATCGAACACTCGGACTATCGAAGCAAGCTTGCCCAAATCCGCCACATCTACCACTCAGAACTGGAGAAGTATGAGCAG
Seq C2 exon
GCATGCAATGAATTCACAACTCATGTCATGAACCTGCTGAGGGAGCAGAGCCGCACTCGTCCTGTGGCCCCCAAGGAGATGGAGCGCATGGTGAGCATTATCCACCGGAAGTTCAGCGCCATCCAGATGCAGCTGAAGCAGAGCACCTGTGAGGCCGTCATGATCCTGCGCTCTCGATTCCTGGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000440-'4-6,'4-2,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.651 C2=0.234
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.6=100)
A:
PF037928=PBC=FE(41.4=100)
C2:
PF037928=PBC=PD(30.8=95.3),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACGCCCTAAACTGTCACC
R:
GCATCCAGGAATCGAGAGCG
Band lengths:
260-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]