DreEX0053792 @ danRer10
Exon Skipping
Gene
ENSDARG00000101131 | pbx1b
Description
pre-B-cell leukemia homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-070424-11]
Coordinates
chr6:2187943-2286742:-
Coord C1 exon
chr6:2286669-2286742
Coord A exon
chr6:2193281-2193525
Coord C2 exon
chr6:2187943-2188133
Length
245 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGCTTTGTGTTTTAGTGT
3' ss Score
11.05
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
AAAACATGCGCTCAACTGCCACAGAATGAAGCCAGCACTCTTCAACGTCCTGTGTGAAATCAAAGAAAAAACAG
Seq A exon
TGTTGAGTATCCGTGGAGCTCAGGAGGAGGAGCCTCCCGACGCTCAGCTGATGCGATTGGACAACATGCTGCTGGCGGAGGGCGTGTCCGGGCCGGAGAAAGGGGGCGGGTCTGCGGCGGCAGCGGCTGCAGCTGCGGCTTCAGGAGGAGTCGGAGCCGATAACTCCGCCGAACACTCTGACTACAGAGCCAAACTCTCACAGATCCGCCAGATCTACCACACTGAGCTGGAGAAATACGAGCAG
Seq C2 exon
GCATGTAACGAGTTCACGACTCATGTGATGAACCTGCTGAGGGAACAGTCTCGCACGCGACCCATCTCGCCCAAAGAGATCGAGCGCATGGTGGGCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTGAAGCAGAGCACCTGTGAGGCCGTGATGATCCTGCGCTCACGATTCCTCGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101131-'1-2,'1-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.500 C2=0.219
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.6=100)
A:
PF037928=PBC=FE(40.9=100),PF070286=DUF1319=PU(55.0=80.5),PF040917=Sec15=PU(32.4=29.3)
C2:
PF037928=PBC=PD(30.8=95.3),PF070286=DUF1319=PD(43.3=81.2),PF040917=Sec15=PD(64.9=75.0),PF0004624=Homeobox=PU(0.1=0.0)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACATGCGCTCAACTGCCA
R:
CGTCGAGGAATCGTGAGCG
Band lengths:
261-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]