HsaEX0045755 @ hg38
Exon Skipping
Gene
ENSG00000167081 | PBX3
Description
PBX homeobox 3 [Source:HGNC Symbol;Acc:HGNC:8634]
Coordinates
chr9:125748550-125929845:+
Coord C1 exon
chr9:125748550-125748623
Coord A exon
chr9:125915686-125915927
Coord C2 exon
chr9:125929655-125929845
Length
242 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTTTCCTTGAAGGTC
3' ss Score
11.75
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GAAACATGCCCTGAACTGTCACAGAATGAAACCAGCGCTCTTCAGCGTCCTGTGTGAGATCAAAGAGAAAACAG
Seq A exon
GTCTCAGCATCAGAGGAGCCCAGGAGGAGGACCCTCCCGATCCCCAGCTAATGAGACTGGACAATATGCTTTTGGCAGAAGGGGTTTCAGGTCCTGAGAAAGGTGGGGGATCGGCGGCAGCAGCTGCAGCCGCGGCAGCCTCTGGAGGTTCTTCAGATAACTCTATTGAACACTCAGATTACAGAGCCAAATTGACCCAGATCAGACAAATCTATCACACAGAACTGGAGAAATATGAACAG
Seq C2 exon
GCATGTAATGAATTTACTACACATGTGATGAACCTTCTCCGAGAACAGAGTAGAACACGTCCCATTTCTCCAAAAGAGATTGAAAGAATGGTGGGCATCATCCATCGAAAATTTAGTTCCATTCAGATGCAGCTCAAACAAAGCACTTGTGAAGCAGTTATGATTTTAAGATCAAGGTTCCTTGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167081_MULTIEX1-5/6=C1-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.152 A=0.687 C2=0.233
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(10.1=94.1)
A:
PF037928=PBC=FE(50.3=100),PF070286=DUF1319=PU(41.8=46.9),PF040917=Sec15=PU(34.6=34.6)
C2:
PF037928=PBC=PD(38.4=95.3),PF070286=DUF1319=PD(56.0=79.7),PF040917=Sec15=PD(63.0=79.7)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACATGCCCTGAACTGTCAC
R:
ACCTTGATCTTAAAATCATAACTGCT
Band lengths:
252-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development