BtaEX0026043 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013314 | PBX3
Description
Bos taurus pre-B-cell leukemia homeobox 3 (PBX3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046453]
Coordinates
chr11:96548188-96731443:+
Coord C1 exon
chr11:96548188-96548261
Coord A exon
chr11:96719401-96719642
Coord C2 exon
chr11:96731253-96731443
Length
242 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTTTCCTTGAAGGTC
3' ss Score
11.75
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GAAACATGCCCTGAACTGTCACAGAATGAAACCCGCGCTCTTCAGTGTCCTGTGTGAGATCAAAGAGAAAACAG
Seq A exon
GTCTCAGCATCAGAGGAGCCCAGGAGGAGGACCCTCCCGATCCCCAGCTAATGAGACTGGACAATATGCTTTTGGCAGAAGGGGTTTCAGGTCCTGAGAAAGGTGGGGGATCGGCGGCAGCAGCTGCAGCCGCGGCAGCCTCTGGAGGTTCTTCAGATAACTCTATTGAACACTCAGATTACAGAGCCAAATTGACCCAGATCAGACAAATCTATCACACAGAACTGGAGAAATATGAACAG
Seq C2 exon
GCATGTAATGAATTCACTACACACGTGATGAACCTTCTCCGAGAACAGAGTAGAACACGTCCCATTTCCCCAAAAGAGATTGAAAGAATGGTGGGCATCATTCATCGAAAATTTAGTTCCATTCAGATGCAGCTCAAACAAAGTACTTGTGAAGCAGTTATGATTTTAAGATCAAGGTTCCTTGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013314_MULTIEX1-3/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.728 C2=0.234
Domain overlap (PFAM):
C1:
NA
A:
PF037928=PBC=PU(55.9=98.8),PF070286=DUF1319=PU(37.2=39.5),PF040917=Sec15=PU(34.6=34.6)
C2:
PF037928=PBC=PD(42.7=95.3),PF070286=DUF1319=PD(60.5=81.2),PF040917=Sec15=PD(63.0=79.7),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACATGCCCTGAACTGTCAC
R:
ACCTTGATCTTAAAATCATAACTGCT
Band lengths:
252-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development