RnoEX0063684 @ rn6
Exon Skipping
Gene
ENSRNOG00000022162 | Pbx3
Description
PBX homeobox 3 [Source:RGD Symbol;Acc:1307198]
Coordinates
chr3:13277411-13434954:-
Coord C1 exon
chr3:13434881-13434954
Coord A exon
chr3:13288374-13288615
Coord C2 exon
chr3:13277411-13277601
Length
242 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTCTTTCCTTGAAGGTC
3' ss Score
11.01
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GAAACATGCTCTGAACTGTCACAGAATGAAACCGGCGCTCTTCAGCGTCTTGTGTGAGATCAAAGAGAAAACAG
Seq A exon
GTCTCAGCATCAGAGGAGCCCAGGAGGAAGACCCTCCCGACCCCCAGCTAATGAGACTGGACAATATGCTTTTGGCAGAAGGGGTTTCAGGTCCTGAGAAAGGTGGGGGATCGGCGGCAGCAGCTGCAGCCGCGGCAGCCTCTGGAGGTTCTTCAGATAACTCTATTGAACACTCAGATTACAGAGCCAAATTGACCCAGATCAGACAAATCTATCACACAGAACTGGAGAAATATGAACAG
Seq C2 exon
GCATGTAATGAATTCACAACACACGTGATGAACCTTCTCCGAGAACAGAGTAGAACGCGTCCCATTTCCCCGAAAGAGATCGAAAGGATGGTGGGCATCATCCACAGGAAGTTTAGCTCCATCCAAATGCAGCTCAAGCAGAGCACGTGTGAAGCAGTCATGATTTTAAGATCAAGGTTCCTTGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022162_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.710 C2=0.234
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.7=100)
A:
PF037928=PBC=FE(40.6=100),PF040917=Sec15=PU(36.4=34.6)
C2:
PF037928=PBC=PD(31.0=95.3),PF040917=Sec15=PD(61.0=73.4),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACATGCTCTGAACTGTCACA
R:
ACCTTGATCTTAAAATCATGACTGCT
Band lengths:
252-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]