MmuEX0033851 @ mm10
Exon Skipping
Gene
ENSMUSG00000038718 | Pbx3
Description
pre B cell leukemia homeobox 3 [Source:MGI Symbol;Acc:MGI:97496]
Coordinates
chr2:34213252-34370897:-
Coord C1 exon
chr2:34370824-34370897
Coord A exon
chr2:34224405-34224646
Coord C2 exon
chr2:34213252-34213442
Length
242 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTCTCTCCTTGAAGGTC
3' ss Score
11.8
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GAAACATGCTCTGAACTGTCACAGAATGAAACCGGCGCTCTTCAGCGTCTTGTGTGAGATCAAAGAGAAAACAG
Seq A exon
GTCTCAGCATCAGAGGAGCCCAGGAGGAAGACCCTCCCGACCCCCAGCTAATGAGACTGGACAATATGCTTTTGGCAGAAGGGGTTTCAGGTCCTGAGAAAGGTGGGGGATCGGCGGCAGCAGCTGCAGCCGCGGCAGCCTCTGGAGGTTCTTCAGATAACTCTATTGAACACTCAGATTACAGAGCCAAATTGACCCAGATCAGACAAATCTATCACACAGAACTGGAGAAATATGAACAG
Seq C2 exon
GCATGTAATGAATTCACAACACATGTGATGAACCTTCTCCGAGAACAGAGTAGAACGCGTCCCATTTCCCCGAAAGAGATCGAAAGGATGGTGGGCATCATCCATCGGAAATTTAGTTCCATTCAGATGCAGCTCAAGCAAAGCACGTGTGAAGCAGTTATGATTTTGAGATCAAGGTTCCTTGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038718-'4-15,'4-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.142 A=0.715 C2=0.236
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(29.6=94.1)
A:
PF037928=PBC=FE(40.6=100)
C2:
PF037928=PBC=PD(31.0=95.3),PF0004624=Homeobox=PU(0.1=0.0)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACATGCTCTGAACTGTCACA
R:
ACCTTGATCTCAAAATCATAACTGCT
Band lengths:
252-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types