GgaEX0000983 @ galGal3
Exon Skipping
Gene
ENSGALG00000000972 | F1P3W1_CHICK
Description
NA
Coordinates
chr17:10452487-10533411:+
Coord C1 exon
chr17:10452487-10452560
Coord A exon
chr17:10528438-10528679
Coord C2 exon
chr17:10533221-10533411
Length
242 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTTTCTGCCCAAGGTT
3' ss Score
8.04
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
TAAGCACGCGCTGAACTGCCACAGGATGAAGCCCGCGCTCTCCAGCGTCCTCTGCGAGATCAAGGAGAAAACAG
Seq A exon
GTTTGAGCATCCGAGGAGCCCAGGAGGAAGACCCTCCCGATCCCCAGCTAATGAGACTAGACAATATGCTTCTGGCAGAAGGAGTCTCAGGTCCGGAGAAAGGTGGGGGATCGGCGGCAGCAGCTGCAGCCGCAGCAGCCTCTGGAGGGTCTTCAGATAACTCTATTGAACACTCAGATTACAGAGCCAAATTGACCCAGATCAGACAAATCTATCACACAGAGCTGGAGAAATATGAACAG
Seq C2 exon
GCATGTAATGAATTTACTACACATGTGATGAACCTGCTCAGAGAACAGAGCCGAACGCGTCCCATTTCTCCTAAGGAGATTGAAAGGATGGTGGGCATCATTCATCGAAAATTCAGCTCCATCCAGATGCAGCTCAAGCAAAGTACTTGTGAAGCAGTCATGATTTTAAGGTCGAGGTTCCTTGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000972_CASSETTE1
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.728 C2=0.234
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.7=100)
A:
PF037928=PBC=FE(40.6=100),PF040917=Sec15=PU(36.4=34.6),PF070286=DUF1319=PU(53.8=77.8)
C2:
PF037928=PBC=PD(31.0=95.3),PF040917=Sec15=PD(61.0=73.4),PF070286=DUF1319=PD(44.4=81.2),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCGCTGAACTGCCAC
R:
CTGGCATCAAGGAACCTCGAC
Band lengths:
261-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]