DreEX0053807 @ danRer10
Exon Skipping
Gene
ENSDARG00000013615 | pbx3b
Description
pre-B-cell leukemia homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-000405-3]
Coordinates
chr8:33943486-34075707:-
Coord C1 exon
chr8:34075634-34075707
Coord A exon
chr8:33949271-33949512
Coord C2 exon
chr8:33943486-33943676
Length
242 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTTGTTGATCAGGTC
3' ss Score
8.52
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GAAACATGGGCTCAACTGTCACAGAATGAAGCCAGCCCTCTTCAGTGTGCTCTGCGAGATCAAAGAGAAAACAG
Seq A exon
GTCTAAGTATCCGCGGGGCTCAGGAGGAGGATCCACCAGATCCACAGCTGATGCGTCTGGACAACATGCTGCTGGCGGAGGGTGTAGCCGGACCAGAGAAGGGTGGAGGATCAGCGGCGGCGGCGGCTGCAGCAGCAGCGGCTGGCAGTCCCACTGACAACTCCATCGAGCACTCCGACTACAGGGCCAAACTCTCCCAGATCAGACAGATCTACCACACCGAGTTGGAGAAATACGAGCAG
Seq C2 exon
GCATGTAATGAGTTCACTACCCACGTAATGAACCTGTTGAGGGAACAGTCTCGCACACGGCCCATCTCGCCCAAAGAGATTGAACGCATGGTCAGCATCATTCATCGCAAATTCAGCTCCATCCAAATGCAGCTTAAACAGAGCACCTGTGAGGCTGTCATGATCTTGAGGTCCCGCTTCCTTGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013615-'2-6,'2-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.646 C2=0.227
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.7=100),PF0044324=UCH=FE(8.8=100)
A:
PF037928=PBC=FE(50.3=100),PF0044324=UCH=PU(16.2=48.1),PF070286=DUF1319=PU(36.0=38.3),PF040917=Sec15=PU(33.7=34.6)
C2:
PF037928=PBC=PD(31.0=95.3),PF0044324=UCH=FE(22.1=100),PF070286=DUF1319=PD(55.9=81.2),PF040917=Sec15=PD(63.4=81.2),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACATGGGCTCAACTGTCAC
R:
GTCAAGGAAGCGGGACCTCAA
Band lengths:
260-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]