DreEX6009087 @ danRer10

Exon Skipping

Gene

ENSDARG00000089262 | pbx3a

Description

pre-B-cell leukemia homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-031218-1]

Coordinates

chr5:4832255-4899407:-

Coord C1 exon

chr5:4899334-4899407

Coord A exon

chr5:4833594-4833835

Coord C2 exon

chr5:4832255-4832445

Length

242 bp

Sequences

Splice sites

3' ss Seq

ACCTTCTGTGTTTTCTGCAGGTC

3' ss Score

13.5

5' ss Seq

CAGGTCTGC

5' ss Score

5.61

Exon sequences

Seq C1 exon

AAAGCACGGGCTGAACTGTCACCGGATGAAGCCGGCTCTCTTCAGCGTGCTCTGCGAAATCAAAGAGAAAACAG

Seq A exon

GTCTGAGCATGCGCAGCAGTCAGGATGAGGAACCTACAGATCCGCAGCTCATGCGTCTGGATAACATGCTGCTGGCGGAGGGCGTGTCCGGGCCTGAGAAAGGGAGCGGGGCTGCGGCGGTTGCTGCGGCTACAGCAGCAGTGGGAGTCGGAGCTGACAACTCCATCGAGCACTCGGATTACAGAGCCAAACTCAGCCAGATCAGACAGATCTACCACACGGAGCTGGAGAAATACGAGCAG

Seq C2 exon

GCGTGTAACGAGTTCACTACCCATGTGATGAACCTGTTGAGGGAACAGTCTCGCACTCGACCCATTTCCCCCAAAGAGATCGAGCGCATGGTGAACATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAACTCAAGCAGAGCACCTGTGAAGCTGTAATGATCCTGCGCTCACGATTCCTCGACGCCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000089262-'1-4,'1-3,2-4=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.231 A=0.380 C2=0.212

Domain overlap (PFAM):

C1:

PF037928=PBC=FE(12.8=100)

A:

PF037928=PBC=FE(40.8=100),PF070286=DUF1319=PU(43.8=51.9),PF040917=Sec15=PU(34.1=34.6)

C2:

PF037928=PBC=PD(43.1=95.4),PF059039=Peptidase_C97=PD(53.9=73.8),PF070286=DUF1319=PD(64.7=84.6),PF040917=Sec15=PD(64.2=80.0),PF083976=IMD=FE(50.0=100),PF0004624=Homeobox=PU(0.1=0.0)

Main Inclusion Isoform:

ENSDARP00000090846