Special

GgaEX0020300 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr3:52482614-52485005:+
Coord C1 exon
chr3:52482614-52482722
Coord A exon
chr3:52483341-52483520
Coord C2 exon
chr3:52484887-52485005
Length
180 bp
Sequences
Splice sites
3' ss Seq
ACCCATTCATTTCTATTTAGCCA
3' ss Score
5.12
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
AAATTGCTGTTTTCCCTGGGAGGATCGTTTCTGTATTATGCTGACCACTTCAAACTGTACAGTGGCTTTTGTGCCAACCACATCAAAGTTCAGAAAGTTCTTGAGAGAG
Seq A exon
CCAAAACAGACAGTGCATTTAAGGCCTTCTTGGATGCTCGCAATCCTACAAAGCAACACTCCTCTACGCTGGAGTCGTATCTCATAAAGCCTGTTCAGAGAGTGCTGAAATATCCTCTGCTTTTGAAAGAGCTGGTGTCCCTGACAGACAACGAGAGTGAGGAGCACTACCATTTGACAG
Seq C2 exon
AAGCGCTGAAGGCAATGGAAAAAGTAGCAAGTCACATCAATGAGATGCAGAAGATATATGAAGATTATGGCACTGTATTTGATCAACTGGTTGCAGATCAAAGTGGAACAGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645-'20-23,'20-22,21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(31.6=100)
C2:
PF0062115=RhoGEF=PD(7.4=35.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGTTTTCCCTGGGAGG
R:
CTCCTTCTCTGTTCCACTTTGA
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]