Special

BtaEX6050113 @ bosTau6

Exon Skipping

Gene
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr9:93229571-93235605:+
Coord C1 exon
chr9:93229571-93229679
Coord A exon
chr9:93233465-93233644
Coord C2 exon
chr9:93235487-93235605
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTTAATCCATCTGCTTGCAGCTA
3' ss Score
8.75
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
AAACTGCTGTTTTCCCTCGGAGGCTCTTTCCTTTATTATGCGGACCACTTTAAACTGTATAGCGGATTCTGTGCTAATCATATTAAAGTACAGAAGGTTCTAGAGCGAG
Seq A exon
CTAAAACTGATAAAGCCTTTAAGGCTTTTCTGGATGCCCGGAACCCCACCAAGCAGCACTCCTCCACGCTGGAGTCTTACCTCATCAAGCCAGTTCAGAGGGTGCTCAAGTACCCGCTGCTGCTCAAGGAGCTGGTGTCCCTGACGGACCACGAGAGCGAGGAGCACTATCATCTGACGG
Seq C2 exon
AAGCACTAAAGGCAATGGAAAAAGTAGCCAGCCACATCAATGAGATGCAGAAGATATATGAAGATTATGGGACCGTATTTGACCAGCTTGTAGCAGAGCAGAGTGGAACAGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010047-'26-35,'26-34,27-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(31.6=100)
C2:
PF0062115=RhoGEF=PD(7.4=35.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCTGTTTTCCCTCGGAG
R:
TCCTTCTCTGTTCCACTCTGCT
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]