DreEX0078861 @ danRer10
Exon Skipping
Gene
ENSDARG00000087780 | tiam2a
Description
T-cell lymphoma invasion and metastasis 2a [Source:ZFIN;Acc:ZDB-GENE-030219-98]
Coordinates
chr17:49118771-49125692:+
Coord C1 exon
chr17:49118771-49118879
Coord A exon
chr17:49122948-49123127
Coord C2 exon
chr17:49125574-49125692
Length
180 bp
Sequences
Splice sites
3' ss Seq
CATTCGTCTTTTCTTTCCAGCTA
3' ss Score
9.31
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
AAGCTGCTCTTCTCTCTGGGTGGCTCATTTCTGTATTATGCGGAGCACTTCAAACTGTACAGCGGCTTCTGCGCCAACCATATTAAAGTGCAGAAGGTTCTGGAACGAG
Seq A exon
CTAAAACAGATCGATCTTTTAAAGAGTTCCTCGATGCTAGGAACCCGACCAAGCAGCACTCAACCACGCTAGAGTCCTACCTGATCAAACCAGTGCAGAGAGTGCTGAAATACCCCCTGCTGCTCCGCGAGCTGGTGTCTCTGACGGACACGGACAGTGAGGAGCACTACCACCTCACAG
Seq C2 exon
AGGCGCTTAAGGAAATGGAAAAGGTCGCAAGCCATATAAACGAAATGCAGAAGATCTACGAAGACTACGGTGCAGTGTTTGACCAGCTGGTGGCAGAGCAAAGTGGCACAGAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087780_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(31.6=100)
C2:
PF0062115=RhoGEF=PD(7.4=35.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGCTCTTCTCTCTGGGT
R:
TCTTTCTCTGTGCCACTTTGCT
Band lengths:
227-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]