RnoEX6000753 @ rn6
Exon Skipping
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44423417-44426652:+
Coord C1 exon
chr1:44423417-44423525
Coord A exon
chr1:44424903-44425082
Coord C2 exon
chr1:44426534-44426652
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTTCTATCCGTTGGTTGCAGCTA
3' ss Score
7.34
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AAATTGCTGTTCTCTCTCGGAGGCTCTTTCCTCTACTACGCAGATCACTTTAAACTGTACAGTGGATTCTGCGCCAACCACATTAAAGTACAGAAGGTCCTAGAGCGAG
Seq A exon
CTAAAACCGACAGAGCTTTCAAGGCTTTTCTGGACGCGCGGAACCCCACGAAGCAGCACTCCTCCACGCTGGAGTCATATCTCATCAAGCCTGTTCAGAGAGTGCTCAAGTATCCTCTGCTCCTCAAGGAGCTCGTGTCACTGACTGACCATGAGAGCGAAGAACACTATCACCTGACAG
Seq C2 exon
AAGCTCTAAAGGCCATGGAAAAAGTAGCCAGTCACATCAATGAGATGCAGAAGATCTACGAGGACTATGGGACGGTGTTTGACCAGCTGGTGGCAGAGCAGAGTGGCACAGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728-'41-27,'41-26,42-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(31.6=100)
C2:
PF0062115=RhoGEF=PD(7.4=35.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGTTCTCTCTCGGAGG
R:
CTCCTTCTCTGTGCCACTCTG
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]