GgaEX0025444 @ galGal3
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
NA
Coordinates
chr1:181237251-181305329:+
Coord C1 exon
chr1:181237251-181237358
Coord A exon
chr1:181299256-181299344
Coord C2 exon
chr1:181305225-181305329
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTTCTTCGTAGGCC
3' ss Score
10.05
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTCAGTCATCTGGCCGTCTGGGGAAGCATGCTGCTCTGGCTCGTCTTCTTCGGTGTCTACTCGGCCATCTGGCCCACATTCCCCATTGCACCCGACATGCTGGGGCAG
Seq A exon
GCCGGAATGGTGCTGAGATGTGGCTACTTCTGGTTTGGGTTATTCCTCGTGCCCACTGTGTGCCTTGTTAAAGATGTGGCATGGACAGC
Seq C2 exon
GGCCAAGCATACCTACCATAAATCTTTGCTGGAACAAGTTCAAGAGTTGGAGATGAAGACAAGAGAGCTGGGAAAAGCCATGCTTCGTGACAGTAATGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'32-35,'32-34,35-35
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=PD(24.3=77.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCTGGCTCGTCTTCTTC
R:
TTACTGTCACGAAGCATGGCT
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]