RnoEX0013448 @ rn6
Exon Skipping
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40000322-40089347:-
Coord C1 exon
chr15:40089240-40089347
Coord A exon
chr15:40006917-40007005
Coord C2 exon
chr15:40000322-40000696
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTGACTTGTGTTTCTTGCAGGCA
3' ss Score
10.28
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTCAGTCACCTGGCAGTGTGGGGAAGCATGCTGATCTGGTTGGTGTTCTTTGGTGTCTATTCAACCTTCTGGCCGACCATCCCCATCGCTCCTGACATGAAAGGGCAG
Seq A exon
GCAACTATGGTCCTGAGTTCTGCCCACTTCTGGTTGGGTTTGCTCCTGGTTCCCACTGCGTGTTTGATCGAGGATGTGGCGTGGAGAGC
Seq C2 exon
GGCCAAACACACCTGCAAAAAGACACTGCTGGAGGAGGTTCAGGAGCTGGAGACCAAGTCCCGAGTGATGGGCAAAGCGATGCTCCGAGACAGCAATGGGAAGAGGTGGGCTGCCCCCGGCGTGCCGTCCTGTCCCCTTCTGTCTCACATTTCCCCTCCTTGGCTAGTTTTCAAGGGGAGCGTGGTAGGCTCGGTTTCAGGCATTCTGATTACATGCTAAGAATGCGGTCCTGGTGAGCTTCAAATTGCATCTTCTCAGCTGCCCTGAGAATCTGAGTTTCTGGGTCACTGGGCCTGTCCCCAGGTAATAGTAGTGGTTTTGTTGGGGCTGGGATGTGGATAAAACAGTCTTGTGAGTAACCGGCAGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053-'59-62,'59-59,63-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=PD(25.0=80.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGACATGAAAGGGCAG
R:
TGTGAGACAGAAGGGGACAGG
Band lengths:
170-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]