MmuEX6041901 @ mm10
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:59684915-59771746:-
Coord C1 exon
chr14:59771639-59771746
Coord A exon
chr14:59691452-59691540
Coord C2 exon
chr14:59684915-59685019
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGACTTGTGTTTTCTTGCAGGCA
3' ss Score
11.69
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTCAGTCACCTGGCGGTGTGGGGAAGCATGCTGATCTGGTTGGTGTTCTTCGGTGTCTATTCAACCATCTGGCCGACCATCCCCATTGCTCCTGACATGAAAGGGCAG
Seq A exon
GCAACTATGGTCCTGAGCTCTGCGTACTTCTGGTTGGGATTGTTCCTGGTTCCGACTGCGTGTTTGATTGAAGACGTGGCGTGGAGAGC
Seq C2 exon
GGCCAAGCACACCTGCAAAAAGACTCTGCTGGAGGAGGTGCAGGAGCTGGAGACCAAGTCCCGAGTGATGGGCAAGGCGATGCTTCGAGACAGTAACGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'71-62,'71-60,75-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=PD(25.0=80.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGAAGCATGCTGATCTG
R:
CTTGCCCATCACTCGGGACTT
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types