GgaEX0025444 @ galGal4
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176189989-176258067:+
Coord C1 exon
chr1:176189989-176190096
Coord A exon
chr1:176251994-176252082
Coord C2 exon
chr1:176257963-176258067
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTTCTTCGTAGGCC
3' ss Score
10.05
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTCAGTCATCTGGCCGTCTGGGGAAGCATGCTGCTCTGGCTCGTCTTCTTCGGTGTCTACTCGGCCATCTGGCCCACATTCCCCATTGCACCCGACATGCTGGGGCAG
Seq A exon
GCCGGAATGGTGCTGAGATGTGGCTACTTCTGGTTTGGGTTATTCCTCGTGCCCACTGTGTGCCTTGTTAAAGATGTGGCATGGACAGC
Seq C2 exon
GGCCAAGCATACCTACCATAAATCTTTGCTGGAACAAGTTCAAGAGTTGGAGATGAAGACAAGAGAGCTGGGAAAAGCCATGCTTCGTGACAGTAATGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'51-56,'51-55,58-56
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=PD(24.3=77.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCTGGCTCGTCTTCTTC
R:
TTACTGTCACGAAGCATGGCT
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]