BtaEX6056476 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025428 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr12:33536321-33540929:+
Coord C1 exon
chr12:33536321-33536428
Coord A exon
chr12:33536908-33536996
Coord C2 exon
chr12:33540837-33540929
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTATCTCTGCTTATTTGCAGGGC
3' ss Score
9.13
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
TTCACCCATTTCGCTATTTGGGGCAGCATAATGATTTGGCTGGGGTTTTTTGCGGTTTACTCCTCCCTCTGGCCCACTGTTCCTGTTGCTCCTGAGATGACAGGACAG
Seq A exon
GGCAGTATGGCTCTGGTGTGTCCACACTTTTGGCTGGGTTTTTTCATAGTCCCGATTGTGTGCCTGATTCAAAATGTAGCGTGGAAATC
Seq C2 exon
GATTAGAAACACCTGCCACAGAACTTTGCTGGAAGAGGTTCGGGAGATGGAAAGCAGCGGAGTTCAGGTACTTCGCAGAGACTCTGTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025428-'34-37,'34-36,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGCTATTTGGGGCAGCAT
R:
GAAGTACCTGAACTCCGCTGC
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]