GgaEX0026427 @ galGal3
Exon Skipping
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7175827-7181737:+
Coord C1 exon
chr18:7175827-7175863
Coord A exon
chr18:7178905-7179029
Coord C2 exon
chr18:7181681-7181737
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTTGCTGGTTTGTGTTGCAGTGC
3' ss Score
7.17
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AAAAAGTATGGGCAAGCAGATGAAGACTGTAGGCATG
Seq A exon
TGCTGGGAGAGGGGCTGGCCAAGGGAGATGGATCTTTCCGTGCAGTGCTCTGCTGCATGCATCTTAAAGGGAAGCTGCAAATTGTGTCTAATGTTCTTTCCAAATCACTGATGGGTGAATCACTG
Seq C2 exon
AACGGGATGGTAACTAAAGATCTGACACGACTGAAAACACTTCTTGCTGAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439-'4-4,'4-3,5-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(16.2=100)
A:
PF134141=TPR_11=PD(2.7=4.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGGGCAAGCAGATGAAGAC
R:
CTCTGTTTCAGCAAGAAGTGTT
Band lengths:
90-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]