HsaEX0029674 @ hg38
Exon Skipping
Gene
ENSG00000198265 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr17:67201129-67215935:-
Coord C1 exon
chr17:67215899-67215935
Coord A exon
chr17:67203319-67203443
Coord C2 exon
chr17:67201129-67201185
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGGCTGTTCTTTCATGGCAGTGC
3' ss Score
7.65
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
AAAAATTATGTGCAAGCTGATGAAGATTGTAGACATG
Seq A exon
TGCTGGGAGAAGGACTGGCCAAGGGAGAAGATGCCTTTCGGGCAGTGCTTTGCTGCATGCAGCTGAAAGGGAAGCTCCAACCTGTATCCACCATTCTTGCCAAGTCACTCACAGGAGAGTCCCTG
Seq C2 exon
AATGGGATGGTAACAAAGGATTTGACAAGACTAAAAACACTTCTCTCAGAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198265-'15-20,'15-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(14.6=100)
A:
PF134141=TPR_11=PD(2.4=4.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTATGTGCAAGCTGATGAAGA
R:
CTCTGTTTCTGAGAGAAGTGTTTT
Band lengths:
92-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development