GgaEX1004792 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GME5]
Coordinates
chr18:7133513-7139423:+
Coord C1 exon
chr18:7133513-7133549
Coord A exon
chr18:7136591-7136715
Coord C2 exon
chr18:7139367-7139423
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTTGCTGGTTTGTGTTGCAGTGC
3' ss Score
7.17
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AAAAAGTATGGGCAAGCAGATGAAGACTGTAGGCATG
Seq A exon
TGCTGGGAGAGGGGCTGGCCAAGGGAGATGGATCTTTCCGTGCAGTGCTCTGCTGCATGCATCTTAAAGGGAAGCTGCAAATTGTGTCTAATGTTCTTTCCAAATCACTGATGGGTGAATCACTG
Seq C2 exon
AACGGGATGGTAACTAAAGATCTGACACGACTGAAAACACTTCTTGCTGAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027152_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGGGCAAGCAGATGAAGAC
R:
CTCTGTTTCAGCAAGAAGTGTT
Band lengths:
90-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]