RnoEX0041509 @ rn6
Exon Skipping
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95797784-95817058:+
Coord C1 exon
chr10:95797784-95797820
Coord A exon
chr10:95814871-95814995
Coord C2 exon
chr10:95817002-95817058
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTCTTCCTTGGCAGTGC
3' ss Score
8.7
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
AAAAACTACGGGCAAGCTGATGAAGATTGTAGGCATG
Seq A exon
TGCTGGGGGAAGGACTGGCCAAGGGAGAGAGCGCCTTCCGGGCAGTGCTGTGCTGCATGCAGCTGAAGGGGAAGCTCCAGCCTGTGTCCTCCATCCTTGCCCAGTCACTGTCAGGGGAGTCTCTG
Seq C2 exon
AATGGGATGGTAACGAAGGATTTGACAAGACTCAAGACACTTCTCGCAGAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(14.6=100)
A:
PF134141=TPR_11=PD(2.4=4.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACGGGCAAGCTGATGAAG
R:
CTCTGTCTCTGCGAGAAGTGT
Band lengths:
90-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]