MmuEX0022714 @ mm9
Exon Skipping
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107439177-107456509:+
Coord C1 exon
chr11:107439177-107439213
Coord A exon
chr11:107454020-107454144
Coord C2 exon
chr11:107456453-107456509
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTTCTTCCTTGGCAGTGC
3' ss Score
8.56
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
AAAAACTACGGGCAAGCTGATGAAGATTGTAGGCATG
Seq A exon
TGCTGGGGGAAGGACTGGCCAAGGGAGAGCGTGCCTTCCGGGCAGTGCTGTGCTGCATGCAGCTGAAAGGGAAGCTCCAGCTTGTGTCCTCCATCCTTGCCAAGTCACTGTCAGGGGAGTCTCTG
Seq C2 exon
AATGGGATGGTAACGAAAGATTTGACAAGACTAAAGACACTTCTCACAGAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721-'6-6,'6-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACGGGCAAGCTGATGAAG
R:
CTCTGTTTCTGTGAGAAGTGTCT
Band lengths:
90-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: