GgaEX0026662 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79358944-79360722:+
Coord C1 exon
chr1:79358944-79359028
Coord A exon
chr1:79360168-79360324
Coord C2 exon
chr1:79360648-79360722
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTTCTCCCTTACAGGCT
3' ss Score
12.88
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
GTTATCAGAGGCAGATGAACTACAAGCACCCAGATGGCTCTTACAGTACCTTTGGACCACGTTATCGCCAACCGGGGAACACCTG
Seq A exon
GCTCACAGCCTTTGTCCTGAAGTCCTTTGCCCGGGCCCGGTCTCACATCTTCATAGATGAAAAGCACATCCAGGATGCTTTGATCTGGCTCAGTCAAAATCAGAAGGAGAATGGCTGCTTCCGCAGTTCTGGGGTGCTCCTGAACAATGCCATGAAG
Seq C2 exon
GGTGGAGTGAACGATGAGGTAACACTGACAGCCTACATCACTATCGCACTGCTGGAGATTCCTCTGCCTGTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'38-43,'38-42,40-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.2=100)
A:
PF076789=A2M_comp=FE(20.7=100)
C2:
PF076789=A2M_comp=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCAGATGAACTACAAGCAC
R:
AGTTACAGGCAGAGGAATCTCCA
Band lengths:
154-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]