GgaEX0026942 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:882062-883229:-
Coord C1 exon
chr17:883159-883229
Coord A exon
chr17:882516-882626
Coord C2 exon
chr17:882062-882163
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGCTCCATGTCCTTTTTCAGAGG
3' ss Score
8.88
5' ss Seq
ACAGTGCGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
CCCAAAGGGGTGCAGAAAATGGGAGACAACCTTCAAGAAGACCAGTGATGATGGTGAAGTCTACTACTCAG
Seq A exon
AGGAAGCCGAGAAAACGGTGGAGGTGCTGGACACGGACTACAAGAGCTATGCAGTGATCTTTGCAACCAGGGTGAAGGATGGGAGGACCTTGCACATGATGAGGCTCTACA
Seq C2 exon
GCAGAAGCCGTGAGGTGAGCCCCACAGCCATGGCAATCTTCAGGAAGCTTGCTAGGGAGCGGAACTACACGGATGAGATGGTCGCCGTGCTGCCCAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024011_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(20.7=100)
A:
PF0006118=Lipocalin=FE(31.9=100)
C2:
PF0006118=Lipocalin=FE(29.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGGGGTGCAGAAAATGG
R:
CAGCACGGCGACCATCTCAT
Band lengths:
162-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]