GgaEX0026942 @ galGal4
Exon Skipping
Gene
ENSGALG00000024011 | Ex-FABP
Description
extracellular fatty acid-binding protein precursor [Source:RefSeq peptide;Acc:NP_990753]
Coordinates
chr17:502825-503992:-
Coord C1 exon
chr17:503922-503992
Coord A exon
chr17:503279-503389
Coord C2 exon
chr17:502825-502926
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGCTCCATGTCCTTTTTCAGAGG
3' ss Score
8.88
5' ss Seq
ACAGTGCGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
CCCAAAGGGGTGCAGAAAATGGGAGACAACCTTCAAGAAGACCAGTGATGATGGTGAAGTCTACTACTCAG
Seq A exon
AGGAAGCCGAGAAAACGGTGGAGGTGCTGGACACGGACTACAAGAGCTATGCAGTGATCTTTGCAACCAGGGTGAAGGATGGGAGGACCTTGCACATGATGAGGCTCTACA
Seq C2 exon
GCAGAAGCCGTGAGGTGAGCCCCACAGCCATGGCAATCTTCAGGAAGCTTGCTAGGGAGCGGAACTACACGGATGAGATGGTCGCCGTGCTGCCCAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024011-'4-5,'4-2,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.0=100)
A:
PF0006118=Lipocalin=FE(26.2=100)
C2:
PF0006118=Lipocalin=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGGGGTGCAGAAAATGG
R:
CAGCACGGCGACCATCTCAT
Band lengths:
162-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]