MmuEX6099615 @ mm10
Exon Skipping
Gene
ENSMUSG00000036449 | Lcn8
Description
lipocalin 8 [Source:MGI Symbol;Acc:MGI:2135945]
Coordinates
chr2:25654745-25655388:+
Coord C1 exon
chr2:25654745-25654815
Coord A exon
chr2:25655115-25655219
Coord C2 exon
chr2:25655299-25655388
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGCCACTGCCACTCCTGAAGGTA
3' ss Score
4.68
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
CTCAGGAAGTTGTGTGACAGAAAGTTCACTGGGTTCAGAAAGAGACACTGTGGGGGAATTTGCTTTTCCTG
Seq A exon
GTAACAGGGAGATCCACGTGCTGGACACGGACTATGAGCGCTACACCATCCTGAAGTTGACCCTGCTCTGGCAGGGTAGAAACTTCCATGTGCTCAAGTACTTCA
Seq C2 exon
CTCGGAGCCTTGAGAACGAGGATGAGCCAGGCTTCTGGCTGTTCCGGGAAATGACAGCAGACCAAGGCCTTTACATGTTGGCCCGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036449-'5-15,'5-12,8-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(18.9=100)
A:
PF0006118=Lipocalin=FE(27.6=100)
C2:
PF0006118=Lipocalin=PD(19.7=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGAAGTTGTGTGACAGA
R:
TGTCGGGCCAACATGTAAAGG
Band lengths:
159-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types