RnoEX0049582 @ rn6
Exon Skipping
Gene
ENSRNOG00000017161 | Lcn8
Description
lipocalin 8 [Source:RGD Symbol;Acc:1306747]
Coordinates
chr3:2873585-2874231:+
Coord C1 exon
chr3:2873585-2873655
Coord A exon
chr3:2873957-2874061
Coord C2 exon
chr3:2874142-2874231
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGCCATTGACGCCCCTGAAGGCA
3' ss Score
2.49
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
CTCAGGAAGTTGTATGACAGAAAGATCAGTGGGTTCAGAAAGAGACGCTGCAGGGGAATTTGCTTTTCCTG
Seq A exon
GCAACAGGGAGATCCACGTGATGGACACGGACTATGAGCGCTACACCATCCTGAAGTTGTCCGTGCTCTGGCAGGGTACAAACTTCCATGTGCTCAAGTACTTCA
Seq C2 exon
CTCGGAGCCTTGAGAATGAGGATGAGCCAGGCTTCTGGAGATTCCGGGAAATGACAGCAGACCAAGGCCTTTACATGCTGGCCCGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017161-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(18.8=100)
A:
PF0006118=Lipocalin=FE(27.3=100)
C2:
PF0006118=Lipocalin=PD(20.3=83.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTATGACAGAAAGATCAGTGGG
R:
CATGTCGGGCCAGCATGTAAA
Band lengths:
154-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]