BtaEX6047705 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017005 | LCN8
Description
lipocalin 8 [Source:HGNC Symbol;Acc:HGNC:27038]
Coordinates
chr11:106391230-106391859:-
Coord C1 exon
chr11:106391789-106391859
Coord A exon
chr11:106391396-106391500
Coord C2 exon
chr11:106391230-106391319
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTCCCGCTTGTCCACGCAGGCC
3' ss Score
10.16
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
CTCAGGAAGTTGTCAGACCGAAGAAATAGTGAGCTCAGAAATGAATGTTTGGGGGAAATTTGTGTTTCCTG
Seq A exon
GCCGCCGGGAGATCCACGTGGTGGACACGGACTATGAGCAGTACGCCATCCTCCGCGTGTCCCTCCAGTGGCAGAACCATGAGTTTTACGTGTTCAAGTATTTCA
Seq C2 exon
CTCGGAGCCTGGGCGGCGAGTGTGAGCCCGGGTTCCTGAAGTTCCGGGAGCTGACCACGGACATGGGGCTGTATCTGGTGGGCCGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017005-'8-3,'8-2,10-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(19.2=100)
A:
PF0006118=Lipocalin=FE(28.0=100)
C2:
PF0006118=Lipocalin=PD(18.4=74.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGAAGTTGTCAGACCGA
R:
GCCCACCAGATACAGCCCC
Band lengths:
154-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]