GgaEX0027817 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13675117-13677102:+
Coord C1 exon
chr1:13675117-13675172
Coord A exon
chr1:13675558-13675589
Coord C2 exon
chr1:13677041-13677102
Length
32 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTTTCAAACCCCAGGGT
3' ss Score
7.06
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACAGAAGAGAGAAGAGCCACAGCATATTTAAGGAATATATTTGAAAACGCCAAAAA
Seq A exon
GGTGCTTTCTCATCTGGATGCTTGGGACTCTG
Seq C2 exon
AGGAAAGGCTCGTACCTCTCTTTCAAGAGGAAGACTATCAGCAGCAATTACTAATGGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042697=DUF440=FE(28.6=100)
A:
NA
C2:
PF042697=DUF440=FE(20.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGAGAAGAGCCACAGCA
R:
AGTCCCATTAGTAATTGCTGCTGA
Band lengths:
115-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]