DreEX6002492 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20489217-20490392:-
Coord C1 exon
chr4:20490334-20490392
Coord A exon
chr4:20489987-20490018
Coord C2 exon
chr4:20489217-20489278
Length
32 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTCTCATGTGCAGAGT
3' ss Score
9.16
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
AACTCGGAGAAGAAGAAATCCCCCCGCAGTCATCACTACATTGAAGAGAACACCAAAAA
Seq A exon
AGTTTTATCCATGGTGGACACTTGGCGTTTGG
Seq C2 exon
ACAGGCGTGTTGTTCCACTCTTTCAGGAGGAAGATCAACAGCAGAGGGTGCTGGTGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAGAAGAAGAAATCCCCC
R:
GCCCACCAGCACCCTCTG
Band lengths:
115-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]