HsaEX0047658 @ hg19
Exon Skipping
Gene
ENSG00000186088 | PION
Description
pigeon homolog (Drosophila) [Source:HGNC Symbol;Acc:28042]
Coordinates
chr7:76955529-76959684:-
Coord C1 exon
chr7:76958650-76959684
Coord A exon
chr7:76957923-76957954
Coord C2 exon
chr7:76955529-76955590
Length
32 bp
Sequences
Splice sites
3' ss Seq
CATGGCTAATTTCTTCGTAGGGT
3' ss Score
7.63
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GGGGGTGATCGAAGACTTCTATGTGTTGATTGTGGTGGTACATTGTGGGACATGAATCTAAACATGATAAAATGACATAGAATGACACACACACATTGTGCCAATGTCAATTTTTGATTTTGATATTGTGCTCTAGTTAGGTAAGATATAAGCACTGAGGAGACTGGGTGGAGGGTACATTGCATCTCTCTCTAGTATCGCTGCATGTAGATTAGTGTTGTTGTGTGTAGTATATAGTTGACTCGCAGTTTCCTGTGAATCTGTAATTGTTTCAGAATAAAATATTTCTTAAAACTTTAAAAAAAATCTAGGTGTTCTGATTACCTGGAAAGTATATTTCTTCTCTCTGATGCTCTTAACTGTATTGCATTATATCCTTGACGTGAAAAGTCACCGATAAAACCTTTACCTTCCACATTTCTGACGTGTTCTCACTCCTAGAAAACAGGAAAAAGAAGGTCTGCGGCATACGTGAGGAATATTCTTGATAATGCAGTAAA
Seq A exon
GGTGATTTCTAACCTAGAAGCAAGAAATTTGG
Seq C2 exon
GGCCAAGATTAACACCCCTCCTGCAGGAGGAAGACAGCCACCAGCGGCTGCTCATGGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088-'34-39,'34-35,36-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF042867=DUF445=FE(14.0=100)
A:
PF042867=DUF445=FE(8.1=100)
C2:
PF042867=DUF445=FE(14.7=100),PF149591=GSAP-16=PU(4.0=19.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCCACATTTCTGACGTGT
R:
TCCTGCAGGAGGGGTGTTAAT
Band lengths:
121-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)