RnoEX0040228 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10437864-10440440:-
Coord C1 exon
chr4:10440382-10440440
Coord A exon
chr4:10439704-10439735
Coord C2 exon
chr4:10437864-10437925
Length
32 bp
Sequences
Splice sites
3' ss Seq
TTCTTAATAAACTTTTGCAGGGT
3' ss Score
7.39
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
AGAACGGGAAAAAGGAGGTCCACAATGTACGTGAGGAACATTCTTGACAACGCTGTGAA
Seq A exon
GGTGATTTCTAACATGGAAATGAAAACATTCG
Seq C2 exon
AGCCAAGGTTAATACCCCTCTTACAAGAGGAAGACAGGCACCAGAGGCTGCTCATGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGGAAAAAGGAGGTCCAC
R:
CCATGAGCAGCCTCTGGTG
Band lengths:
114-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]