BtaEX6026931 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44127003-44129559:+
Coord C1 exon
chr4:44127003-44127061
Coord A exon
chr4:44127746-44127777
Coord C2 exon
chr4:44129498-44129559
Length
32 bp
Sequences
Splice sites
3' ss Seq
TTGGCTAATTTTTCTTATAGGGT
3' ss Score
7.58
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AAAACAGGAAAAAGAAGGTCTACGGTGTATGTGAGAAATATTCTTGATAATGCAATAAA
Seq A exon
GGTGATTTCTAACGTAGAAGCAAAGAATTTGG
Seq C2 exon
AGCCAAGATTAACACCCCTCTTCCAGGAGGAAGACACCCACCAGCAGCTGCTTATCGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430-'29-25,'29-24,30-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAAAAGAAGGTCTACGGTGT
R:
CAGCCCGATAAGCAGCTGC
Band lengths:
117-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]