GgaEX1000659 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNM9]
Coordinates
chr12:2655546-2656171:+
Coord C1 exon
chr12:2655546-2655690
Coord A exon
chr12:2655765-2655987
Coord C2 exon
chr12:2656089-2656171
Length
223 bp
Sequences
Splice sites
3' ss Seq
TCCCTTGGTGTTCCCTGCAGTGC
3' ss Score
9.63
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CGCTGTGTTCAGCGGCTCCGCCGTCTGCGTCTACTCCATGGCTGCAGTCAGAGCAGCCTTCAGCGGCCCCTTCGCGCACAAGGAGGGCTTCGACCACCGCTGGGTGCAGTACAAGGGCCGCGTCCCCTACCCCCGCCCTGGCACG
Seq A exon
TGCCCCAGCGAGACGTACGACCCACTGCTGCGCTCCACCAAGGACTTCCCCGACGAGGTGATCAGCTTTGTGCGCGCCCACCAGCTGATGTGGGAGCCCATCCGCCCGCTGGGCCGCCGGCCCGTCCTGCTCCGTGCCAACGTTCCCTACCGGCTGCGGCAGCTGCTGGTGCACCGGCTGGAGGCTGAGGGCCGCCACTACGATGTGCTCTTCCTTGGCACAG
Seq C2 exon
ATGATGGGAAGGTGCTGAAGGTGGGGCTGCCCGGTGAGGTGGGTGCCGAGGCTGTGAGCCTAGAGGAGATCAGCGTCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-'10-17,'10-16,11-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.7=100)
A:
PF0140314=Sema=FE(16.5=100)
C2:
PF0140314=Sema=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTTCAGCGGCTCCG
R:
TGACGCTGATCTCCTCTAGGC
Band lengths:
221-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]