BtaEX0031844 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010138 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr22:50657272-50658295:-
Coord C1 exon
chr22:50658151-50658295
Coord A exon
chr22:50657625-50657844
Coord C2 exon
chr22:50657272-50657363
Length
220 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTCCCCACCTCCCAGTGC
3' ss Score
7.88
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
CAGCATCTTCCAGGGTTCTGCCGTGTGCGTGTACAGCATGAATGATGTACGCCGGGCCTTCCTGGGACCCTTTGCACACAAGGAGGGGCCCATGCACCAGTGGGTGTCCTACCAGGGACGTGTCCCCTACCCCCGACCTGGCATG
Seq A exon
TGCCCCAGCAAGACTTTTGGCACCTTCAGTTCCACCAAGGACTTTCCTGATGATGTCATCCAGTTTGCCCGGAACCACCCCCTCATGTACAATTCGGTCCTGCCCATCGGTGGGCGCCCTCTCTTCCAACAAGTGGGCGCCGGGTACACCTTCACCCAGATCACTGCAGACCGTGTCGCAGCTGCTGATGGATACTACGATGTCCTCTTCATTGGCACAG
Seq C2 exon
ATGTAGGCACAGTGCTGAAGGTGATCTCCGTCCCCAAGGGCGGCTGGCCAAATGCTGAGGGGCTGCTCCTGGAGGAATTACACATGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010138-'20-24,'20-22,21-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.8=100)
A:
PF0140314=Sema=FE(16.5=100)
C2:
PF0140314=Sema=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCTTCCAGGGTTCTGC
R:
TCAAACATGTGTAATTCCTCCAGGA
Band lengths:
236-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development