GgaEX7007733 @ galGal4
Exon Skipping
Gene
ENSGALG00000013722 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr12:3223727-3224323:+
Coord C1 exon
chr12:3223727-3223871
Coord A exon
chr12:3223939-3224158
Coord C2 exon
chr12:3224232-3224323
Length
220 bp
Sequences
Splice sites
3' ss Seq
CCCAGCTCTGCCTCCCGCAGTGC
3' ss Score
7.76
5' ss Seq
CAGGCACGT
5' ss Score
2.9
Exon sequences
Seq C1 exon
CTCCATCTTCCAGGGCTCGGCCGTCTGCGTTTACACCATGGCCGACATCCGCCGGGCGTTCCTGGGCCCCTTTGCGCACAAGGAGGGCCCCAACTACCAGTGGGTGCCATACCAGGCGCGCGTGCCGTACCCCCGCCCGGGCATG
Seq A exon
TGCCCCAGCAGAACCTTCGGCACCTTCAGCTCCACCAAGGACTTCCCGGATGAGGTGATCCAGTTTGCCCGGCACCACCCACTGATGTACAACCCAGTGCTGCCCCACGGCCAGCGGCCCCTCTTCCTGCAAGCCGGCGTGCCCCACACCTTCACCCGCATCGCCGTCGACCGCGTGGCTGCCGCCGATGGCCACTACGACGTCCTCTTCATTGGCACAG
Seq C2 exon
ATGTGGGCACCGTGCTGAAGGTGGTCTCGGCACCGCAGCAGAGCTGGCACGGCATGGAGCCGCTGCTGCTGGAGGAGCTGCAGGTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722-'16-20,'16-18,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.0=100)
A:
PF0140314=Sema=FE(16.8=100)
C2:
PF0140314=Sema=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATCTTCCAGGGCTCGG
R:
CTGGAAGACCTGCAGCTCCTC
Band lengths:
237-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]