RnoEX0079268 @ rn6
Exon Skipping
Gene
ENSRNOG00000016512 | Sema3b
Description
semaphorin 3B [Source:RGD Symbol;Acc:1310079]
Coordinates
chr8:116355942-116357049:-
Coord C1 exon
chr8:116356905-116357049
Coord A exon
chr8:116356388-116356607
Coord C2 exon
chr8:116355942-116356033
Length
220 bp
Sequences
Splice sites
3' ss Seq
ACGTGCCTTGCCTTCTCTAGTGC
3' ss Score
8.61
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
TGGCATCTTCCAGGGCTCTGCTGTGTGCGTGTACAGCATGAACGACGTGCGCCGAGCCTTCTTGGGACCTTTTGCTCACAAAGAGGGGCCTACACATCAGTGGGTGTCCTACCAGGGTCGGGTACCCTACCCAAGACCTGGCATG
Seq A exon
TGCCCCAGCAAGACCTTTGGCACCTTCAGCTCCACCAAGGACTTCCCAGATGATGTTATCCAGTTTGCTCGGAACCACCCCCTCATGTACAACTCAGTCCTGCCCATGGGGGGGCGCCCTCTCTTCCTACAAGTGGGAGCTGGGTACACCTTCACCCAGATCGCTGCAGACCGGGTAGCAGCAGCCGATGGACACTACGATGTGCTCTTCATCGGCACAG
Seq C2 exon
ATGTGGGCACGGTGCTGAAAGTCATCTCAGTCCCCAAGGGCAGCCGACCTAACTCGGAAGGACTTCTCCTGGAAGAGCTGCAGGTGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016512_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.8=100)
A:
PF0140314=Sema=FE(16.5=100)
C2:
PF0140314=Sema=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCTTCCAGGGCTCTG
R:
TCAAACACCTGCAGCTCTTCC
Band lengths:
236-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]