GgaEX1001205 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:277493-284679:+
Coord C1 exon
JH375182.1:277493-277687
Coord A exon
JH375182.1:281220-281374
Coord C2 exon
JH375182.1:284398-284679
Length
155 bp
Sequences
Splice sites
3' ss Seq
CGAAATAATCTTTGTTTCAGGCC
3' ss Score
6.76
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTACTCCAAAGCCTGTTATCAAATGGCTGCATAATGGAAGAGAACTGACAGGCAGAGAACCAGGAATTTCAATTCTGGAGAATGACATGCTGCTGATTATAGCTTCTATTACACCTTCTGATAATGGAGAATATATCTGTGTGGCAACCAATGAAGCCGGAAGGACAGAAAGAAAGTATAACCTGGAAGTTCATG
Seq A exon
GCCTCTGTTCTTGGGTGATCCCAATGTTGAGCTTCTGGAGAAAGGTCAAGTTCTGCATATAAAGTCTGCTCGAATGGTTGACAAAGGTCATTACCAGTGCAGTGCCACTAATGCTGCTGGCAAACAAATTAAGGAGGTCAAGCTGATCATCCATG
Seq C2 exon
TTCCTCCAGTAATAGAGGGCGATGCTGAAACAGCTCAGAGCAGACAGGTGGTTGCTGGCAATTCACTAACTTTAGAATGTAAAGCTGCTGGCAACCCTTCTCCTCTCCTTACCTGGCTAAAGGATGGTGTGCCTGTGAAAGCAAGTGACAACCTCCGTGTTGTGTCTGGTGGGAAGAAGCTGGAGATCCTCAATGCTGTTGAAGCTGACCGAGGCCAGTATTTGTGTGTTGCCACAAGCATAGCTGGAGAACAAGAAATCAAGTATGGAGTTGAAATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX8-4/6=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(76.8=95.5)
A:
PF0767911=I-set=PD(58.1=94.3)
C2:
PF0767911=I-set=WD(100=89.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGGCAGAGAACCAGGAA
R:
GAAGGGTTGCCAGCAGCTTTA
Band lengths:
250-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]