DreEX0037769 @ danRer10
Exon Skipping
Gene
ENSDARG00000079327 | hmcn2
Description
hemicentin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9765]
Coordinates
chr8:32699647-32702583:+
Coord C1 exon
chr8:32699647-32699773
Coord A exon
chr8:32699848-32700005
Coord C2 exon
chr8:32702305-32702583
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTGTGGTCTTCGTGTCTCAGGGT
3' ss Score
8.74
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CTCCACCAGTAATATCGGGAACTTCAGGAGTGCAGGAAGTGACCATCATGGCGGGACAGGAAGTGGATATGCAGTGTAGAGTCAGTGGTCGTCCTCTGCCTTCAGTGGAATGGACTCATGATGGAGA
Seq A exon
GGTTTTATCCCCTAATGGAGACCCTCATGTGGAGTTTCTGGAGAAGGGGCAGGTGTTGAGGGTTAAGTCTGTCAGGCCTAGGGATCGTGGCCTGTATCAGTGTGTGGCGACAAACAACGCTGGGACTCAGACAAGACAGTTCAGGCTGACCATACAAG
Seq C2 exon
CTGCTCCATTGATCCGTGACTCTGGTGAGGATTCAGAAGTAACTGTAGTTCTGGGCTTCCCGGCTGTTCTTCACTGTGAAGTTGAAGGGATTCCACTTCCCACTATCACCTGGCTGAAGGACAACCAGCCCATAGTGTCCAGCCCTCAGCTCACATACACACAGGGTGGACAGTCTTTGCGTGTGGCTGCGGCTCGTGGTGAAGATGCAGGCGCATACACCTGCCGAGCAACCAATCCGGCTGGAACAGCACATAGACATTACACACTAAGAATTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079327-'30-32,'30-31,31-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.185 C2=0.117
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(43.5=93.0)
A:
PF0767911=I-set=PD(55.4=94.4)
C2:
PF0767911=I-set=WD(100=90.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGTGACCATCATGGCG
R:
GTGTGTATGTGAGCTGAGGGC
Band lengths:
257-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]