HsaEX6063513 @ hg19
Exon Skipping
Gene
ENSG00000148357 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:21293]
Coordinates
chr9:133224924-133228592:+
Coord C1 exon
chr9:133224924-133225050
Coord A exon
chr9:133226810-133226964
Coord C2 exon
chr9:133228314-133228592
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCCCTTGCCCGTCTCTCCAGGCC
3' ss Score
10.85
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CCCCTCCTTCCGTGCTTGGAGCCGGGGCCGCTCAGGAGGTGCTAGGATTGGCCGGTGCAGACGTGGAGCTGCAGTGTTGGACCTCAGGGGTCCCCACGCCCCAGGTGGAGTGGACCAAGGACAGGCA
Seq A exon
GCCTGTCCTTCCGGGAGGCCCTCACCTGCAGGTCCAGGAGGATGGCCAGGTTCTCAGGATCACCGGCAGTCACGTGGGGGATGAGGGACGATACCAGTGCGTGGCCTTCAGCCCAGCTGGTCAGCAGGCCAGGGACTTCCAGCTCCGAGTTCATG
Seq C2 exon
CGCCCCCCACTATCTGGGGCTCCAACGAGACAGGCGAGGTGGCCGTCATGGAGGACCACCTAGTGCAGCTCCTGTGTGAGGCTCGAGGAGTGCCCACCCCAAACATCACCTGGTTCAAGGACGGGGCCCTGCTCCCCACCAGCACCAAGGTGGTCTACACTAGGGGCGGTCGGCAGTTGCAGCTGGGGAGGGCCCAGAGCTCCGATGCCGGCGTCTACACCTGCAAGGCCAGCAATGCTGTGGGGGCCGCAGAGAAGGCCACCAGGCTGGATGTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148357-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.250 C2=0.065
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(40.0=79.1)
A:
PF0767911=I-set=PD(58.8=96.2)
C2:
PF0767911=I-set=WD(100=91.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGATTGGCCGGTGCAGA
R:
GCCCCTAGTGTAGACCACCTT
Band lengths:
253-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)