MmuEX6100388 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31384839-31386889:+
Coord C1 exon
chr2:31384839-31384965
Coord A exon
chr2:31385150-31385304
Coord C2 exon
chr2:31386611-31386889
Length
155 bp
Sequences
Splice sites
3' ss Seq
GATTGATGGCTTTTCTCTAGGCC
3' ss Score
6.73
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
TCCCTCCCTCCTTGCTGGGAGCTGGGGCCGCTCAGGAGGTGCTTGGCCTGGCTGGTGCTGATGTGACATTGGAGTGTCAGACCTCAGGGGTTCCCACGCCCCAGGTGGAGTGGACCAAGGATGGGCA
Seq A exon
GCCTATCCTTCCAGGGGATCCTCACATCCTGCTGCAGGAGGATGGCCAAGTTCTCAGAATTATCAGCAGTCACTTAGGTGACGAAGGGCAGTATCAGTGTGTGGCCTTCAGCCCAGCCGGCCAGCAGGCCAAGGACTTTCAGCTCAGCATTCACT
Seq C2 exon
CACCACCCACCATCTGGGGCTCGAATGAGACAGGTGAGGTGACTGTCCTGGAGGGCCACACCGCACAGCTCCTATGTGAGGCCCGAGGAATGCCATCCCCTGCCATCACCTGGTACAAGGATGGGACCCTGCTGGCCCCCAGCTCAGAAGTGGTTTACAGCAAGGGCGGCCGGCAGCTGCAGCTGGTGAAGGCCCAGCCCTCCGATGCTGGCCTCTACACCTGCCAGGCCAGCAACCCTGCAGGGATTACGAAGAAATCCACCAGTCTGGAGGTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'30-40,'30-38,37-40=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=0.127 C2=0.090
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(39.3=76.7)
A:
PF0767911=I-set=PD(59.5=94.3)
C2:
PF0767911=I-set=WD(100=90.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTGCTGATGTGACATT
R:
CGCCCTTGCTGTAAACCACTT
Band lengths:
246-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types