BtaEX6046750 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100694616-100697123:+
Coord C1 exon
chr11:100694616-100694742
Coord A exon
chr11:100695744-100695898
Coord C2 exon
chr11:100696845-100697123
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCTCAACCGTCTTTTTCCAGACC
3' ss Score
9.17
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
TTCCACCTTCGGTGCTTGGAGCCGAGGCTGCCCAGGAGGTGGTGGGCCTGGCTGGCGCAGGGGCAGAGCTGGAGTGCCGGACCTTGGGGGTCCCCACACCCCAGGTGGAGTGGACCAAGGACGGGCA
Seq A exon
ACCTGTCTTTCTGGGGGAGCCTCGTGTCCAGCTTCAGGAGGATGGCCAGGTTCTCAGAATCACCAACAGTCACCTGGGAGATGAGGGCTGGTACCAGTGTGTGGCCTTCAGCCCGGCTGGCCAGCAGACCAAGGACTTTCAGCTCAGAATCCACG
Seq C2 exon
CACCCCCCACCATCTGGGGCTCCAACGAGACGAGCGAGGTGGCCGTCATGGAGGGCCACCCCGTGTGGTTCCTGTGCGAGGCCCGAGGGGTGCCCACGCCCGACATCACCTGGTTCAAGGATGGTGACCCCCTGGTCCCCAGCACTGAGGTGGTCTACACCAGAGGCGGCCGGCAGCTGCAGCTGGAGCGAGCCCAGGGCTCAGATGCTGGCACCTACAGCTGCAAGGCCAGCAATGCTGTGGGGGTTGTGGAGAAGACCACCCGGCTGGAGGTTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'31-36,'31-34,32-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.075 C2=0.096
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(40.7=81.4)
A:
PF0767911=I-set=PD(58.1=94.3)
C2:
PF0767911=I-set=WD(100=90.4),PF139271=Ig_3=PU(3.6=3.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGGAGTGGACCAAGGA
R:
CTGTAGGTGCCAGCATCTGAG
Band lengths:
246-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]