GgaEX0007077 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:284189-287878:+
Coord C1 exon
chr8_random:284189-284315
Coord A exon
chr8_random:285268-285422
Coord C2 exon
chr8_random:287226-287878
Length
155 bp
Sequences
Splice sites
3' ss Seq
CGAAATAATCTTTGTTTCAGGCC
3' ss Score
6.76
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTCCTCCCAGTATAATAGGTGCTGATACCCCCAGTGAAATTGCAGTCATCCTCAACCAGGAAACGAGTCTGGAATGCAGAGCCAAAGGCTTTCCTTTTCCTGGCATTCACTGGTTCAAAGACAGCAT
Seq A exon
GCCTCTGTTCTTGGGTGATCCCAATGTTGAGCTTCTGGAGAAAGGTCAAGTTCTGCATATAAAGTCTGCTCGAATGGTTGACAAAGGTCATTACCAGTGCAGTGCCACTAATGCTGCTGGCAAACAAATTAAGGAGGTCAAGCTGATCATCCATG
Seq C2 exon
GAGACATGGAGGCCCAGCAGACTTAACCTGGCATATGTTGGAGCCTCAAACACGAAGTGTTCTCAGGTACTTTTAGTGAGGCAGTAATGCTTTCTAGTGCCCCTTGGTGTGATGCCTGTTTATTAAATATAAGGTGTTCTTTGACAGTAGATTCCATTTGTGTTTGTGTTGTCCTCTCTTCATCCTTCCAGCTCGATGTGCCAAAGAGAAATCTACAGACACGGAAAAAAGCATCTCAAAAGCACCAGGAAAGATCAGAAGTCTGAATAACCTAAAATCTTTTATTCTTAGAACATTCTAATGTTAAAATTATTTAAAGCTGCACAGGCTTGTATACTAAGGCTTTTATGCTGTTGTTTTGTCTTTTGAAATAGTTCCTCCTAGTATTAAAGGAGGCAATATTACTACAGAGGTATCAGCACTTCTTAACAATCTTATAAATCTGGATTGTGAAACCAAGGGAATCCCTGTTCCTACCATTACCTGGTACAAAGAAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'36-45,'36-44,37-45
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(40.7=81.4)
A:
PF0767911=I-set=PD(58.1=94.3)
C2:
PF0767911=I-set=WD(100=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTTCCTTTTCCTGGCAT
R:
TTTGGCACATCGAGCTGGAAG
Band lengths:
247-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]