RnoEX6044610 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68085942-68094817:-
Coord C1 exon
chr13:68094691-68094817
Coord A exon
chr13:68093049-68093203
Coord C2 exon
chr13:68085942-68086220
Length
155 bp
Sequences
Splice sites
3' ss Seq
TATGAAATAATTTTTTCTAGGCC
3' ss Score
6.78
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TTCCACCCAGCATACAAGGTGCCGGCTCCCCAAATGAAGTCTCAGTTGTTCTTAACCACAACATCACCCTACAGTGCCCGGTCAGAGGCACTCCCTTTCCGGCTATTCACTGGTTCAAGGATGGCAA
Seq A exon
GCCTTTATTTTTGGGGGATCCTAACATTGAACTCTCAGACAGAGGACAGAATTTACATCTGAGAAATGCACGGAGAAGTGACAAGGGGCGCTACCAATGTTCTGTGTCCAATGCAGCTGGCAAGCAAGCCAAGGATATAAAGCTCACTCTCTACG
Seq C2 exon
TTCCACCTAGTATTAAAGGAGGCAATGTCACCACAGAAATATCGGCATTGCTCAACAGCGTAGTTAAACTGGAATGTGAGACGCGGGGGCTTCCTGTGCCTGCCATTACTTGGTATAAGGATGGCCAGGTGGTCACATCCAGCTCACAAGCACTTTATATTGACAAAGGACAATTTCTCCACATCCCGAGAGCACAAGTCTCTGACTCAGCAACGTATACATGTCACGCATCCAATGTTGCTGGAACAGCCGAAAAATCATTCCATGTTGACATCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'38-40,'38-39,39-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.151 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(42.0=86.0)
A:
PF0767911=I-set=PD(56.8=94.3)
C2:
PF0767911=I-set=WD(100=90.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCCCTTTCCGGCTATTC
R:
AGAGACTTGTGCTCTCGGGAT
Band lengths:
243-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]