GgaEX1001782 @ galGal3
Exon Skipping
Gene
ENSGALG00000007388 | SRRM4
Description
NA
Coordinates
chr15:10012401-10018249:-
Coord C1 exon
chr15:10018238-10018249
Coord A exon
chr15:10013904-10014047
Coord C2 exon
chr15:10012401-10012484
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTGGCCTCTTGCCATGCAGTGG
3' ss Score
6.86
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AACAGAAAAAAT
Seq A exon
TGGGACGCTCAGCTGCCTGCCGTACCCTGCCGAAGATCGACGTCCTGAGAAGCTGAGCAGCTGTGTGTCCAAGGAGACCTCCACCACTAATGGCTGGGCAAGAGGGAAGGAGAGACGCGACCATGCTCACCACAGGTCACGCAG
Seq C2 exon
CCCGTCGTGTGATGGGGAACGTGCACCACCGCCGGCCCGGGGGAAGAAGAAGAAGAAGAAATCCAGCCGCAAGAAGCGACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007388-'1-2,'1-1,2-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.959 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]