RnoEX0086151 @ rn6
Exon Skipping
Gene
ENSRNOG00000001141 | Srrm4
Description
serine/arginine repetitive matrix 4 [Source:RGD Symbol;Acc:1560213]
Coordinates
chr12:45727112-45846629:+
Coord C1 exon
chr12:45727112-45727242
Coord A exon
chr12:45839790-45839936
Coord C2 exon
chr12:45846543-45846629
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCTCATCTCCTCCCGTGCAGGAC
3' ss Score
9.91
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGGCGAGCCTGCAGCAAGGCGAGAAACAGCTGTTTGAGAAGTTCTGGAAAGGGACCTTCAAAGCAGTGGCCACTCCGCGTCCCGAGAGCATCATCGTCGCCAGTATCACAGCCCGCAAGCCGATGCCAAG
Seq A exon
GACAGAGACACAGAGCAGTCTCCTGCTCCCAGACCAGGACGGACCTTCAGAGAAGCTGGGCCAACGTCTGGCCACTGAGGCCCTTGGTACCAACAGCTGGGGAAGAGAGAAAGCCTGCAGGGAGCTGGGTCCTGCCAGAGCACACAG
Seq C2 exon
TGCCTCTCAAGACAGAGACCCGACACCACCACCTTCCTCCAGGGGGAAAAAGAAAAAGAAGAAATCGACCAGGAAAAAGAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001141-'0-5,'0-3,1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=0.985 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGCAAGGCGAGAAA
R:
CTCCTCCTCTTTTTCCTGGTCG
Band lengths:
210-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]